STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1116Hypothetical signal peptide protein. (359 aa)    
Predicted Functional Partners:
recJ
Probable single-stranded-dna-specific exonuclease protein.
       0.840
RSc1001
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.725
RSc0566
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.724
RSc0155
Hypothetical protein of unknown function duf185.
  
     0.701
RSc1117
Probable lipoprotein releasing system transmembrane.
       0.693
lolD
Probable lipoprotein-releasing system atp-binding lold. abc transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.693
RSc1325
Hypothetical protein of unknown function duf598.
 
     0.679
ftsN
Probable cell division ftsn transmembrane protein.
  
     0.658
ftsL
Probable cell division ftsl transmembrane protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.655
RSc0460
Hypothetical protein of unknown function duf1243.
  
     0.651
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.