STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1121Hypothetical protein of unknown function duf407. (507 aa)    
Predicted Functional Partners:
RSc1122
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.989
RSc1123
Putative transglutaminase-like enzyme protein.
 
  
 0.931
RSc3298
Hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
      0.914
RSc1124
Putative proteasome-type protease protein.
 
  
 0.900
RSc2697
Putative ipr002931 transglutaminase-like enzyme protein.
 
  
 0.844
RSc1120
Hypothetical transmembrane protein.
       0.661
RSp1032
Hypothetical protein of unknown function ucp012641.
 
     0.574
RSc1119
Probable deoxyribonuclease protein.
       0.570
lolD
Probable lipoprotein-releasing system atp-binding lold. abc transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
    0.514
RSc1117
Probable lipoprotein releasing system transmembrane.
       0.505
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.