STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1123Putative transglutaminase-like enzyme protein. (292 aa)    
Predicted Functional Partners:
RSc1122
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.995
RSc1121
Hypothetical protein of unknown function duf407.
 
  
 0.931
RSc1124
Putative proteasome-type protease protein.
 
    0.919
katE
Probable catalase hydroperoxidase hpII oxidoreductase protein; Belongs to the catalase family.
   
   0.564
RSc1120
Hypothetical transmembrane protein.
       0.515
RSc1125
Putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily) protein.
       0.496
RSp1032
Hypothetical protein of unknown function ucp012641.
 
     0.452
RSc1119
Probable deoxyribonuclease protein.
       0.441
RSc2697
Putative ipr002931 transglutaminase-like enzyme protein.
 
    
0.425
pyrG
Probable ctp synthase (utp--ammonia ligase) (ctp synthetase) protein; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.403
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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