STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1140Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (286 aa)    
Predicted Functional Partners:
RSc1141
Putative rna-binding protein, yrdc; Belongs to the SUA5 family.
    0.940
rnc
Probable ribonuclease III (rnase III) protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.906
trpS
Probable tryptophanyl-trna synthetase (syw protein).
     
 0.691
RSc1142
Putative peptidase m50; transmembrane protein.
       0.681
RSc1136
Putative thiol-disulphide oxidoreductase dcc protein.
       0.545
RSc1137
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.545
RSc1138
Putative saccharopine dehydrogenase and relateds oxidoreductase protein.
       0.545
RSc1139
Probable thioredoxin reductase oxidoreductase protein.
       0.545
RSc1694
Probable phage hk022 gp18-related protein.
   
    0.517
RSc1144
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.494
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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