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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1141Putative rna-binding protein, yrdc; Belongs to the SUA5 family. (207 aa)    
Predicted Functional Partners:
RSc1140
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    0.924
pcaC
Putative 4-carboxymuconolactone decarboxylase protein.
      
 0.733
vanA
Probable vanillate o-demethylase oxygenase subunit oxidoreductase protein.
     
 0.729
RSc2540
Putative atpase or kinase protein.
 
  
 0.668
RSc1142
Putative peptidase m50; transmembrane protein.
  
    0.659
RSc1367
Hypothetical transmembrane protein.
 
  
 0.657
gcp
Probable o-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.646
fca
Probable ferulic acid hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.642
trpS
Probable tryptophanyl-trna synthetase (syw protein).
       0.635
vdh
Probable vanillin dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
   
  
 0.621
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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