STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1142Putative peptidase m50; transmembrane protein. (225 aa)    
Predicted Functional Partners:
trpS
Probable tryptophanyl-trna synthetase (syw protein).
      0.787
RSc1144
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.784
RSc0452
Putative transmembrane protein.
  
  
 0.692
RSc1141
Putative rna-binding protein, yrdc; Belongs to the SUA5 family.
  
    0.659
RSc1140
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.611
dapA
Probable dihydrodipicolinate synthase (dhdps) protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.519
ftsW
Probable cell division ftsw transmembrane protein; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
 
   
 0.487
RSc1146
Probable transmembrane protein.
       0.466
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.431
ispZ
Probable intracellular septation. transmembrane protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
     0.419
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.