STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1150Probable signal peptide protein. (354 aa)    
Predicted Functional Partners:
mutS
Probable dna mismatch repair protein muts; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
     
 0.812
RSc1152
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
    0.534
RSc1788
Probable ankyrin repeat harboring signal peptide protein.
  
 
 
 0.521
RSc2234
Probable transmembrane protein.
  
     0.514
RSp1215
Probable pseudogene (truncated type III effector protein with ankyrin repeats).
  
 
 
 0.463
RSc3098
Putative gcn5-related n-acetyltransferase; protein.
  
     0.449
RSc0781
Probable ankyrin repeat harboring signal peptide protein.
  
 
 
 0.446
RSc0299
Putative prolin-rich signal peptide protein.
  
   
 0.441
RSc3299
Probable transmembrane protein.
 
     0.425
RSc2005
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.