STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RSc1154Putative aldo/keto reductase; oxidoreductase protein. (283 aa)    
Predicted Functional Partners:
RSc1153
Putative transmembrane efflux transmembrane protein.
 
     0.860
iolG
Putative oxidoreductase myo-inositol 2-dehydrogenase signal peptide protein; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
  
  
 0.846
RSc1248
Probable dehydrogenase oxidoreductase protein.
  
  
 0.846
RSp1473
Putative oxidoreductase (related to aryl-alcohol dehydrogenases) oxidoreductase protein.
 
 
 0.722
rhlE1
Probable atp-dependent rna helicase protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
 
 0.656
otsB
Probable trehalose-phosphatase protein; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
   0.568
RSc1152
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.540
RSc1766
Probable nadp-dependent oxidoreductase oxidoreductase protein.
   
 
 0.529
RSc1155
Probable methyl-accepting chemotaxis transducer transmembrane protein.
       0.507
sodC
Probable superoxide dismutase cu-zn precursor protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 
 0.482
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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