STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1177Hypothetical transmembrane protein. (222 aa)    
Predicted Functional Partners:
RSc0352
Probable peptidase transmembrane protein; Belongs to the peptidase S41A family.
    
 
 0.545
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.535
RSc1173
Probable substrate-binding periplasmic (pbp) abc transporter protein.
  
  
 0.437
RSc0873
Putative bacteriophage-related transmembrane protein.
 
 
 0.436
RSc1176
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
       0.425
RSc0900
Putative outer membrane signal peptide protein.
 
 
 0.423
RSc1174
Probable transmembrane abc transporter protein.
       0.409
RSc1175
Probable transmembrane abc transporter protein.
       0.409
RSc1698
Probable bacteriophage protein.
  
    0.404
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.