STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1200Probable cog0600, abc-type nitrate/sulfonate/bicarbonate transport system, permease component abc transporter protein. (263 aa)    
Predicted Functional Partners:
RSc1199
Putative aaa atpase protein.
  
 0.971
RSc1198
Putative abc-type nitrate/sulfonate/bicarbonate transport system, periplasmic component abc transporter protein.
 
  
 0.943
RSp1507
Probable atp-binding abc transporter protein.
  
 0.867
RSc3391
NitT/TauT family transport system substrate-binding protein; Probable cog0715, abc-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component abc transporter protein.
  
 0.863
ssuA2
Putative alkanesulfonates binding protein precursor.
 
  
 0.843
ssuA1
Putative alkanesulfonates binding precursor signal peptide protein.
 
  
 0.831
ssuB
Putative aliphatic sulfonates atp-binding abc transporter protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 0.819
RSc3372
Probable composite atp-binding transmembrane abc transporter protein.
  
 0.800
nasD
Putative nitrate atp-binding abc transporter protein.
  
 0.760
nasE
Putative nitrate transmembrane abc transporter protein.
  
     0.696
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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