STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1202Probable flavoprotein nadh-dependent oxidoreductase. (378 aa)    
Predicted Functional Partners:
RSp0445
Putative nadh:flavin oxidoreductase/nadh oxidase; oxidoreductase protein.
  
  
 
0.907
gntP
Probable high-affinity gluconate transporter (gnt-III system) transmembrane protein.
      
 0.631
edd
Probable phosphogluconate dehydratase oxidoreductase protein; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
      
 0.589
RSc1201
Probable transcription regulator protein.
  
    0.565
RSc1200
Probable cog0600, abc-type nitrate/sulfonate/bicarbonate transport system, permease component abc transporter protein.
       0.417
acpD
Putative acyl carrier protein phosphodiesterase (acpphosphodiesterase); Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity.; Belongs to the azoreductase type 1 family.
      
 0.409
RSc2674
Putative glutathione peroxidase protein; Belongs to the glutathione peroxidase family.
     
 0.407
qor
Probable nadph:quinone reductase, zeta-crystallin homolog oxidoreductase protein.
  
  
 0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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