STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1203Probable oxidoreductase protein. (324 aa)    
Predicted Functional Partners:
RSc2042
Putative maoc-like dehydratase; protein.
 
 0.954
RSc1806
Probable polyketide synthase protein.
 
 
 0.914
fabF1
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
    0.900
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.900
fabF2
Putative 3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
    0.896
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
 
    
 0.873
RSc0427
Probable 3-oxoacyl-[acyl-carrier-protein] synthase (beta-ketoacyl-acp synthase); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
    0.783
RSp0787
Putative amp-dependent synthetase and ligase transmembrane protein.
 
 
 0.766
RSc2016
Putative aminoglycoside phosphotransferase protein.
 
   0.743
RSc1810
Probable polyketide synthase protein.
 
 
 0.717
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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