Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RSc0153 | RSc1206 | RSc0153 | RSc1206 | Putative zn-dependent protease with chaperone function signal peptide protein. | Probable lipoprotein. | 0.531 |
RSc0561 | RSc1206 | RSc0561 | RSc1206 | Probable zinc metallopeptidase signal peptide protein. | Probable lipoprotein. | 0.601 |
RSc1206 | RSc0153 | RSc1206 | RSc0153 | Probable lipoprotein. | Putative zn-dependent protease with chaperone function signal peptide protein. | 0.531 |
RSc1206 | RSc0561 | RSc1206 | RSc0561 | Probable lipoprotein. | Probable zinc metallopeptidase signal peptide protein. | 0.601 |
RSc1206 | hmsH | RSc1206 | RSp0286 | Probable lipoprotein. | Putative hemin-binding outer membrane transmembrane protein. | 0.531 |
RSc1206 | mrcA | RSc1206 | RSc2976 | Probable lipoprotein. | Probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein. | 0.452 |
RSc1206 | mtgA | RSc1206 | RSc2776 | Probable lipoprotein. | Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.496 |
RSc1206 | pcm-2 | RSc1206 | RSc1205 | Probable lipoprotein. | Putative protein-l-isoaspartate carboxylmethyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.757 |
RSc1206 | ragB | RSc1206 | RSc2275 | Probable lipoprotein. | Probable polysaccharide transport system component signal peptide protein. | 0.531 |
RSc1206 | rpoS | RSc1206 | RSc1207 | Probable lipoprotein. | Rna polymerase sigma s (sigma-38) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.801 |
RSc1206 | slt | RSc1206 | RSc0088 | Probable lipoprotein. | Probable soluble lytic murein transglycosylase precursor transmembrane protein. | 0.498 |
RSc1206 | surE | RSc1206 | RSc1204 | Probable lipoprotein. | Probable 5'-nucleotidase sure (nucleoside 5'-monophosphatephosphohydrolase) protein; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.794 |
hmsH | RSc1206 | RSp0286 | RSc1206 | Putative hemin-binding outer membrane transmembrane protein. | Probable lipoprotein. | 0.531 |
mrcA | RSc1206 | RSc2976 | RSc1206 | Probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein. | Probable lipoprotein. | 0.452 |
mrcA | mtgA | RSc2976 | RSc2776 | Probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein. | Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.461 |
mrcA | slt | RSc2976 | RSc0088 | Probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein. | Probable soluble lytic murein transglycosylase precursor transmembrane protein. | 0.461 |
mtgA | RSc1206 | RSc2776 | RSc1206 | Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | Probable lipoprotein. | 0.496 |
mtgA | mrcA | RSc2776 | RSc2976 | Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | Probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein. | 0.461 |
pcm-2 | RSc1206 | RSc1205 | RSc1206 | Putative protein-l-isoaspartate carboxylmethyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | Probable lipoprotein. | 0.757 |
pcm-2 | rpoS | RSc1205 | RSc1207 | Putative protein-l-isoaspartate carboxylmethyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | Rna polymerase sigma s (sigma-38) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.792 |
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