STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1248Probable dehydrogenase oxidoreductase protein. (390 aa)    
Predicted Functional Partners:
RSc1247
Probable sugar phosphate isomerases/epimerases protein.
  
 0.978
iolD
Putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
  
 0.871
iolB
Putative myo-inositol catabolism protein.
 
  
 0.866
iolG
Putative oxidoreductase myo-inositol 2-dehydrogenase signal peptide protein; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
     0.860
iolH
Putative protein implicated in myo-inositol catabolique pathway.
 
  
 0.842
iolC
Probable transferase kinase protein.
 
  
 0.811
RSc1154
Putative aldo/keto reductase; oxidoreductase protein.
  
  
 0.803
iolE
Putative myo-inositol catabolism protein.
  
 0.799
rhlE1
Probable atp-dependent rna helicase protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
     
 0.786
iolI
Putative protein implicated in myo-inositol catabolique pathway.
 
    0.670
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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