STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1252Putative nitrous oxide reductase, n-terminal; signal peptide protein. (330 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
  
    0.957
RSc1253
Putative polysaccharide deacetylase; signal peptide protein.
 
     0.950
RSc1254
Putative sterol desaturase transmembrane protein.
 
     0.942
norB
Probable nitric oxide reductase (subunit b) transmembrane protein.
  
 
 0.878
RSc1255
Probable transmembrane protein.
 
     0.803
nosR
Probable transmembrane regulatory nosr transcription regulator protein.
  
  
 0.771
nosZ
Probable nitrous-oxide reductase precursor (n(2)or) (n2oreductase). oxidoreductase protein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family.
   
  
 0.755
RSc3255
Putative cytochrome c transmembrane protein.
  
 
 0.745
RSc1811
Putative siderophore synthetase protein.
  
    0.707
RSp0642
Probable non ribosomal peptide synthetase protein.
  
    0.700
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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