STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1253Putative polysaccharide deacetylase; signal peptide protein. (273 aa)    
Predicted Functional Partners:
RSc1254
Putative sterol desaturase transmembrane protein.
 
     0.947
RSc1252
Putative nitrous oxide reductase, n-terminal; signal peptide protein.
 
     0.940
RSc1255
Probable transmembrane protein.
 
    0.808
RSc1256
Putative molybdopterin binding domain-harboring protein.
     
 0.613
RSc2378
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.576
RSc0794
Probable transmembrane protein.
  
     0.536
addB
Probable homologous recombinational repair protein.
 
     0.516
RSc2377
Proline rich protein.
  
     0.506
hrpA
Probable atp-dependent rna helicase protein.
       0.475
hmsR
Putative hemin storage transmembrane protein.
  
  
 0.473
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.