STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1253Putative polysaccharide deacetylase; signal peptide protein. (273 aa)    
Predicted Functional Partners:
RSc1254
Putative sterol desaturase transmembrane protein.
 
     0.951
RSc1252
Putative nitrous oxide reductase, n-terminal; signal peptide protein.
 
     0.950
RSc1255
Probable transmembrane protein.
 
    0.847
RSc1256
Putative molybdopterin binding domain-harboring protein.
     
 0.688
RSc2378
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.576
RSc0794
Probable transmembrane protein.
  
     0.536
addB
Probable homologous recombinational repair protein.
  
     0.515
RSc2377
Proline rich protein.
  
     0.506
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.483
hrpA
Probable atp-dependent rna helicase protein.
       0.474
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.