STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1256Putative molybdopterin binding domain-harboring protein. (272 aa)    
Predicted Functional Partners:
RSc1255
Probable transmembrane protein.
     0.942
RSc1253
Putative polysaccharide deacetylase; signal peptide protein.
     
 0.688
RSc1252
Putative nitrous oxide reductase, n-terminal; signal peptide protein.
  
    0.657
RSc0562
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.641
pgsA
Probable cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.604
RSc1254
Putative sterol desaturase transmembrane protein.
       0.596
RSc0454
Putative fe-s oxidoreductase fad/fmn-containing dehyfrogenase oxidoreductase protein.
 
     0.567
nadE
Probable nh3-dependent nad+ synthetase signal peptide protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.559
zapD
Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.547
RSc2890
Putative ipr009202 peptidase m61, glycyl monoaminopeptidase protein.
  
     0.508
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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