STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1259Putative signal peptide protein. (170 aa)    
Predicted Functional Partners:
RSc1062
Probable transmembrane protein.
  
     0.775
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.761
RSp0189
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.750
RSc0400
Putative gtpase (dynamin-related) harboring a t-snare domain protein.
  
     0.749
RSc2157
Putative serine/threonine protein kinase.
  
     0.747
RSc2158
Putative protein phosphatase 2c-like.
  
     0.745
pilO
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
    0.741
RSc0176
Probable lipoprotein.
  
     0.739
pilI
Putative twitching motility protein.
  
     0.731
pilP
Probable fimbrial type-4 assembly lipoprotein.
  
     0.721
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.