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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpBProbable glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide. (438 aa)    
Predicted Functional Partners:
ugpE
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.997
ugpA
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein.
 
 0.996
upgC
Probable sn-glycerol-3-phosphate transport atp-binding abc transporter protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 0.991
RSc2142
Probable transmembrane abc transporter protein.
 
 
 0.795
RSc2143
Probable transmembrane abc transporter protein.
 
 
 0.782
RSc3049
Probable transmembrane abc transporter protein.
  
 
 0.756
RSc2140
Probable sugar atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
 
 0.753
ugpQ
Probable glycerophosphoryl diester phosphodiesterase protein.
 
  
 0.707
RSc3048
Probable sugar abc transporter, permease abc transporter protein.
  
 
 0.706
RSc3046
Putative sugar-phosphate atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
  
 
 0.637
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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