Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RSc1274Probable cation-transporting atpase lipoprotein transmembrane. (851 aa)    
Predicted Functional Partners:
RSc1275
Probable signal peptide protein.
 
  
 0.922
copZ
Probable copper ion-binding protein.
  
 
 0.869
RSc1280
Probable iron-sulfur 4fe-4s ferredoxin transmembrane protein.
 
  
 0.862
RSc1277
Probable cytochrome c oxidase (subunit II) transmembrane protein.
 
   
 0.843
RSc1276
Probable cytochrome c oxidase (subunitI transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.841
RSc1279
Probable cytochrome c oxidase (subunit III) transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.836
RSc1284
Probable transmembrane protein.
 
   
 0.756
RSp0992
Probable signal peptide protein.
 
   
 0.585
RSp0993
Probable cytochrome c oxidase subunit transmembrane protein.
 
   
 0.540
RSc1278
Probable cog4736, cbb3-type cytochrome oxidase, subunit 3 oxidoreductase protein.
       0.517
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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