STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1297Probable pseudogene (sterol desaturase fragment) transmembrane protein. (71 aa)    
Predicted Functional Partners:
RSp0404
Probable transmembrane protein.
 
 
 0.715
crtB
Putative phytoene synthase protein.
  
 
 0.620
RSc3080
Probable transcription regulator protein.
 
     0.495
RSc2436
Putative acetyltransferase protein.
  
     0.484
RSc2086
Putative transcription regulator protein.
  
     0.466
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.464
RSc1806
Probable polyketide synthase protein.
  
 
 0.455
RSc1499
Hypothetical protein; Miscellaneous; unknown.
   
  
 0.451
RSp1030
Probable cog3687, predicted metal-dependent hydrolase protein.
  
     0.444
RSp0971
Probable transmembrane protein.
  
     0.426
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.