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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1315Putative signal peptide protein. (141 aa)    
Predicted Functional Partners:
RSc2818
Putative lipoprotein.
  
     0.612
RSc2234
Probable transmembrane protein.
  
     0.600
RSc2005
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.562
RSc3360
Hypothetical transmembrane protein.
  
     0.527
RSc1316
Putative phoh-like protein.
       0.507
repA
Probable repa replicase protein.
  
     0.501
RSc1314
Putative cell wall-associated hydrolase transmembrane protein.
       0.495
RSc0600
Hypothetical protein of unknown function duf330.
  
     0.470
RSc0460
Hypothetical protein of unknown function duf1243.
  
     0.454
RSc2855
Putative outer membrane porin signal peptide protein.
  
     0.451
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.