STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1318Putative polysaccharide deacetylase; protein. (297 aa)    
Predicted Functional Partners:
RSc1323
Putative transmembrane protein.
 
  
 0.973
pmrF
Probable lipid a biosynthesis (glycosyltransferase) transmembrane protein.
 
  
 0.963
pmrK
Probable lipid a biosynthesis transmembrane protein.
  
 0.959
pmrIa
Methionyl-tRNA formyltransferase; Probable uridine 5''-diphospho--(4-deoxy-4-formamido-l-arabinose) synthase (formyltransferase) oxidoreductase protein.
 
  
 0.946
pmrIb
Probable uridine 4''-ketopentose synthase oxidoreductase protein.
 
  
 0.942
RSp1193
Probable glycosyltransferases of pmt family transmembrane protein.
  
 0.931
pmrH
Probable udp-l-4-amino-4-deoxy-l-arabinose synthase (aminotransferase) protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.926
bcp
Probable bacterioferritin comigratory oxidoreductase protein.
       0.561
nfrB
Probable inner membrane transmembrane protein.
 
  
 0.545
RSc0436
Putative glycosyl transferase, family 2; protein.
  
  
 0.504
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.