STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pmrIbProbable uridine 4''-ketopentose synthase oxidoreductase protein. (351 aa)    
Predicted Functional Partners:
pmrIa
Methionyl-tRNA formyltransferase; Probable uridine 5''-diphospho--(4-deoxy-4-formamido-l-arabinose) synthase (formyltransferase) oxidoreductase protein.
   
 0.996
pmrF
Probable lipid a biosynthesis (glycosyltransferase) transmembrane protein.
  
 0.995
pmrH
Probable udp-l-4-amino-4-deoxy-l-arabinose synthase (aminotransferase) protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.967
RSc1318
Putative polysaccharide deacetylase; protein.
 
  
 0.943
RSc1323
Putative transmembrane protein.
 
  
 0.928
fmt
Probable methionyl-trna formyltransferase protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
    
 0.903
pmrK
Probable lipid a biosynthesis transmembrane protein.
 
  
 0.901
RSp1193
Probable glycosyltransferases of pmt family transmembrane protein.
 
  
 0.823
RSc1806
Probable polyketide synthase protein.
  
 
 0.800
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.798
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.