Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pmrFProbable lipid a biosynthesis (glycosyltransferase) transmembrane protein. (332 aa)    
Predicted Functional Partners:
RSc1318
Putative polysaccharide deacetylase; protein.
 
 
 0.996
pmrIb
Probable uridine 4''-ketopentose synthase oxidoreductase protein.
  
 0.995
pmrIa
Methionyl-tRNA formyltransferase; Probable uridine 5''-diphospho--(4-deoxy-4-formamido-l-arabinose) synthase (formyltransferase) oxidoreductase protein.
  
 0.986
pmrH
Probable udp-l-4-amino-4-deoxy-l-arabinose synthase (aminotransferase) protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.972
pmrK
Probable lipid a biosynthesis transmembrane protein.
 
  
 0.960
RSc1323
Putative transmembrane protein.
 
  
 0.932
RSp1193
Probable glycosyltransferases of pmt family transmembrane protein.
 
  
 0.929
bacA
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
      
 0.796
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.565
vanA
Probable vanillate o-demethylase oxygenase subunit oxidoreductase protein.
   
  
 0.556
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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