STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1323Putative transmembrane protein. (123 aa)    
Predicted Functional Partners:
RSc1318
Putative polysaccharide deacetylase; protein.
 
  
 0.973
pmrF
Probable lipid a biosynthesis (glycosyltransferase) transmembrane protein.
 
  
 0.931
pmrK
Probable lipid a biosynthesis transmembrane protein.
 
  
 0.931
pmrIb
Probable uridine 4''-ketopentose synthase oxidoreductase protein.
 
  
 0.927
pmrH
Probable udp-l-4-amino-4-deoxy-l-arabinose synthase (aminotransferase) protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.911
pmrIa
Methionyl-tRNA formyltransferase; Probable uridine 5''-diphospho--(4-deoxy-4-formamido-l-arabinose) synthase (formyltransferase) oxidoreductase protein.
 
  
 0.903
RSp1193
Probable glycosyltransferases of pmt family transmembrane protein.
 
  
 0.845
RSc1325
Hypothetical protein of unknown function duf598.
       0.569
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.499
guaA
Probable gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase) (gmp synthetase) protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.496
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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