STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rraAProbable regulator of ribonuclease activity a protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). (168 aa)    
Predicted Functional Partners:
RSc1355
Hypothetical protein of unknown function upf0131.
       0.773
RSp1231
Putative dimethylmenaquinone methyltransferase; protein.
  
   
 0.765
ilvG
Putative acetolactate synthase isozyme II (large subunit) protein; Belongs to the TPP enzyme family.
       0.682
aceA
Probable isocitrate lyase protein.
 
    0.569
RSc1350
Probable transmembrane protein.
       0.488
RSc1351
Putative transmembrane sensor histidine kinase transcription regulator protein.
       0.488
RSc1352
Probable two-component response regulator transcription regulator protein.
       0.488
ripG
Type III effector protein gala6.
     
 0.460
mscL
Probable large-conductance mechanosensitive channel transmembrane protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
   
  
 0.400
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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