STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1355Hypothetical protein of unknown function upf0131. (137 aa)    
Predicted Functional Partners:
RSc2709
Putative ipr001608 alanine racemase, n-terminal protein.
 
      0.787
rraA
Probable regulator of ribonuclease activity a protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
       0.773
ilvG
Putative acetolactate synthase isozyme II (large subunit) protein; Belongs to the TPP enzyme family.
       0.682
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
     0.660
RSc3091
Probable outer membrane porin signal peptide protein.
  
     0.655
RSc1236
Probable outer membrane protein (porin).
  
     0.600
RSc2760
Probable ipr001702 outer membrane (porin) signal peptide protein.
  
     0.577
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.575
RSp0660
Probable porin protein.
  
     0.570
RSp1399
Probable porin signal peptide protein.
  
     0.551
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.