STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ripGType III effector protein gala6. (620 aa)    
Predicted Functional Partners:
ripA
Type III effector protein awr1.
      
 0.830
RSp0097
Probable ankyrin-repeat harboring protein.
  
     0.695
ripB
Type III effector ripb protein.
      
 0.635
popP2
Type III effector protein popp2.
      
 0.635
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
  
     0.593
RSc2365
Putative orn/lys/arg decarboxylase, c-terminal;chey-like; protein.
      
 0.550
RSp0842
Putative leucine-rich-repeat type III effector protein.
  
     0.544
RSc0257
Putative type III effector protein with ankyrin repeats.
  
     0.520
RSc0782
Probable cation transport protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
  
   
 0.478
RSp1609
Probable acid sphingomyelinase-like phosphodiesterase transmembrane protein.
  
     0.478
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.