STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1377Probable transcription regulator protein. (332 aa)    
Predicted Functional Partners:
RSc1378
Probable l-asparaginase precursor protein.
 
    0.842
RSc1384
Putative peptidase m55 related protein.
 
     0.767
RSc0081
Putative transcriptional regulator transcription regulator protein.
  
     0.744
RSc1380
Probable substate-binding periplasmic (pbp) abc transporter protein.
 
     0.628
RSc1379
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
  
    0.606
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
  
  
 0.548
RSc1383
Probable peptidase protein.
 
    0.545
RSc1376
Probable atp-binding abc transporter protein.
       0.528
RSc1375
Probable predicted acyl-coa transferase/carnitine dehydratase-related transmembrane protein; Belongs to the CoA-transferase III family.
       0.467
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.