STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1389Putative adenylate cyclase protein. (172 aa)    
Predicted Functional Partners:
prmB
Probable methylase/methyltransferase protein; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
       0.773
dapE
Probable succinyl-diaminopimelate desuccinylase protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.773
RSc1391
Probable thioredoxin-related protein; Belongs to the ArsC family.
       0.722
RSc1392
Putative transmembrane protein.
       0.722
RSp1590
Putative fad dependent oxidoreductase; oxidoreductase protein.
  
     0.580
dapD
Probable 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase (tetrahydrodipicolinate n-succinyltransferase) (thp succinyltransferase) (tetrahydropicolinate succinylase) protein; Belongs to the transferase hexapeptide repeat family.
       0.568
dapC
Probable succinyldiaminopimelate aminotransferase protein.
       0.496
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
     0.494
RSc1874
Putative nucleoside diphosphate hydrolase protein.
 
     0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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