STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1395Probable transmembrane protein. (306 aa)    
Predicted Functional Partners:
dapC
Probable succinyldiaminopimelate aminotransferase protein.
 
     0.662
RSc1396
Putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily) transmembrane protein.
  
    0.634
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.579
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
     0.572
dapD
Probable 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase (tetrahydrodipicolinate n-succinyltransferase) (thp succinyltransferase) (tetrahydropicolinate succinylase) protein; Belongs to the transferase hexapeptide repeat family.
  
    0.563
RSc1116
Hypothetical signal peptide protein.
  
     0.517
addB
Probable homologous recombinational repair protein.
 
     0.472
RSc1059
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.457
addA
Probable homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily.
 
     0.447
RSc2789
Probable transmembrane protein.
  
     0.442
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.