STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaQProbable transcriptional regulatory dna-binding transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
   
 0.922
pcaI
Probable 3-oxoadipate coa-transferase subunit a protein.
      
 0.830
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
  
   
 0.812
pcaG
Probable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein.
 
     0.784
RSc0160
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.767
RSc0214
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.762
RSc2497
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.757
RSp1593
Probable transcription regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.715
RSp0535
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.684
RSp1241
Probable cog1510, predicted transcriptional regulators protein; Belongs to the GbsR family.
      
 0.679
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.