STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaGProbable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein. (216 aa)    
Predicted Functional Partners:
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
0.999
pcaB
Probable 3-carboxy-cis,cis-muconate cycloisomerase protein.
 
 
 0.985
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
 
  
 0.983
pcaD2
Probable b-ketoadipate enol-lactone hydrolase protein.
 
   
 0.928
pcaC
Putative 4-carboxymuconolactone decarboxylase protein.
 
  
 0.848
pcaQ
Probable transcriptional regulatory dna-binding transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.784
RSp1400
Probable 4-hydroxyphenylpyruvate dioxygenase-related protein.
 
   
 0.735
pcaD
Probable b-ketoadipate enol-lactone hydrolase transmembrane protein.
 
   
 0.723
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
     
 0.657
RSp0032
Putative nadh:flavin oxidoreductases oxidoreductase protein.
     
 0.657
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.