STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hipAPutative hipa transcription regulator protein. (445 aa)    
Predicted Functional Partners:
RSc1447
Putative transcription regulator protein.
  
  
 0.818
RSc1445
Putative efflux permease transmembrane protein.
       0.773
RSc2621
Hypothetical protein of unknown function duf1016.
  
     0.598
RSc2508
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.577
relE
Putative cytotoxic translational repressor of toxin-antitoxin stability system protein.
      
 0.577
RSc1448
Putative pep phosphonomutase or related enzyme protein.
       0.535
parE
Probable dna topoisomerase iv (subunit b) protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
      
 0.473
gltX
Probable glutamyl-trna synthetase (glutamate--trna ligase)(glurs) protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
   
 0.448
RSc1444
Putative protein-disulfide isomerase.
       0.432
RSc3225
Hypothetical protein of unknown function upf0156.
  
     0.423
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.