STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betBPutative betaine aldehyde dehydrogenase (badh) oxidoreductase protein; Belongs to the aldehyde dehydrogenase family. (478 aa)    
Predicted Functional Partners:
betA
Putative choline dehydrogenase lipoprotein oxidoreductase.
 
 
 0.910
fmt
Probable methionyl-trna formyltransferase protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.898
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.586
RSc1806
Probable polyketide synthase protein.
  
 
 0.530
RSc1455
Probable proline-rich protein.
       0.519
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
  
  
 0.459
iolB
Putative myo-inositol catabolism protein.
  
  
 0.456
RSc0463
Probable sodium/solute symporter transmembrane protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.455
iolD
Putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
  
 0.433
RSp1011
Probable threonine dehydrogenase or related zn-dependent dehydrogenase oxidoreductase protein.
  
 
 0.427
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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