STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1458Putative glucoamylase or related glycosyl hydrolase protein. (619 aa)    
Predicted Functional Partners:
otsB
Probable trehalose-phosphatase protein; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
 0.866
RSp0240
Putative glycosidase possibly involved in trehalose metabolism protein.
 
   
 0.851
RSp0731
Probable trehalose-6-phosphate synthase (alpha,alpha-trehalose-phosphate synthase udp-forming) protein.
 
   
 0.792
otsA
Probable alpha,alpha-trehalose-phosphate synthase protein; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
 
   
 0.789
glgE
Putative alpha-amylase-related protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
 
   
 0.719
RSc1457
Probable protein of unknown function duf1289.
       0.671
treY
Probable maltooligosyl trehalose synthase transmembrane protein.
 
   
 0.643
RSc1459
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.566
RSp0237
Putative 1,4-alpha-glucan branching enzyme protein.
 
  
 0.565
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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