STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1466Putative atpase protein. (301 aa)    
Predicted Functional Partners:
RSc1467
Probable dehydrogenase, oxidoreductase protein.
 
   
 0.951
RSc1465
Probable von willebrand domain harboring protein.
 
     0.950
RSc1464
Probable transmembrane protein.
 
     0.946
RSc1468
Putative oxidoreductase molybdopterin-binding subunit, oxidoreductase protein.
 
   
 0.941
RSc1469
Probable oxidoreductase oxidoreductase protein.
 
   
 0.825
RSc1463
Hypothetical protein of unknown function duf182.
       0.639
RSc0996
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
    0.632
RSc2365
Putative orn/lys/arg decarboxylase, c-terminal;chey-like; protein.
   
 
 0.417
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.