STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1494Putative integrase-like protein; Belongs to the 'phage' integrase family. (233 aa)    
Predicted Functional Partners:
RSc1896
Putative integrase prophage protein; Belongs to the 'phage' integrase family.
  
     0.773
RSc0962
Putative bacteriophage dna-binding transcription regulator protein.
 
  
 0.745
RSc1865
Putative dna primase-related protein.
 
     0.541
RSc2483
Hypothetical toprim subdomain harboring protein related to dna primases.
 
     0.532
tISRso14a-2
Isrso14-transposase orfa protein.
       0.520
tISRso14b-2
Isrso14-transposase orfb protein.
       0.471
int
Integrase-tyrosine recombinase protein; Belongs to the 'phage' integrase family.
  
     0.446
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.