STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1499Hypothetical protein; Miscellaneous; unknown. (233 aa)    
Predicted Functional Partners:
RSc1498
Hypothetical protein; Miscellaneous; unknown.
       0.803
RSc1500
Putative aldo/keto reductase; oxidoreductase protein.
       0.773
RSc1496
Hypothetical protein; Miscellaneous; unknown.
  
    0.738
RSc1497
Putative methyltransferase protein.
       0.732
tuf1
Probable elongation factor tu (ef-tu protein); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.627
tuf2
Probable elongation factor tu (ef-tu protein).
   
   0.627
RSc1495
Hypothetical protein; Miscellaneous; unknown.
       0.535
hemF
Oxygen-dependent coproporphyrinogen-III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
   
  
 0.508
RSc1254
Putative sterol desaturase transmembrane protein.
   
  
 0.451
RSc1297
Probable pseudogene (sterol desaturase fragment) transmembrane protein.
   
  
 0.451
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.