STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1523Probable transmembrane protein. (155 aa)    
Predicted Functional Partners:
greA
Probable transcription elongation factor grea (transcript cleavage factorgrea) protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.782
RSc0559
Putative lipida core-o-antigen ligase transmembrane protein.
  
     0.715
RSc0299
Putative prolin-rich signal peptide protein.
  
     0.706
RSc1397
Probable transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.659
RSc2383
Putative transmembrane protein.
  
     0.640
RSc3098
Putative gcn5-related n-acetyltransferase; protein.
  
     0.627
RSc0686
Putative lipopolysaccharide o-side chain biosynthesis transmembrane protein.
  
     0.608
carB
Probable carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein.
       0.590
cobD-2
Putative cobalamin biosynthesis cobd-related transmembrane protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
     0.550
carA
Probable carbamoyl-phosphate synthase small chain (carbamoyl-phosphate synthetase glutamine chain) protein; Belongs to the CarA family.
       0.547
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.