STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1542Putative uncharacterized nad(fad)-dependent dehydrogenase transmembrane protein. (421 aa)    
Predicted Functional Partners:
RSc3263
Putative cytochrome c signal peptide protein.
   
 0.983
soxF
Probable sulfide dehydrogenase flavocytochrome c oxidoreductase protein.
  
  
 
0.927
cysI2
Probable sulfite reductase oxidoreductase protein.
   
 0.911
cysI1
Probable sulfite reductase oxidoreductase protein; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 0.911
RSp0781
Probable cystathionine beta-lyases/cystathionine gamma-synthases protein.
    
 0.904
cysK1
Probable cysteine synthase a protein.
     
 0.903
RSc1541
Probable transmembrane protein.
 
   
 0.841
RSc1544
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
 0.816
RSc1543
Probable transcription regulator protein.
       0.533
copC
Probable copper resistance c signal peptide protein.
    
   0.469
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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