STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1556Probable oxidoreductase protein. (470 aa)    
Predicted Functional Partners:
RSc1557
Probable transmembrane protein.
 
     0.850
wrbA
Probable trp repressor binding protein; Belongs to the WrbA family.
     
 0.773
rbn
Putative ribonuclease bn transmembrane protein.
       0.677
mqo
Probable malate:quinone oxidoreductase (malatedehydrogenase [acceptor]) (mqo). oxidoreductase protein.
    
 0.560
etfA
Probable electron transfer flavoprotein (alpha-subunit).
 
 
 0.547
etfB
Probable electron transfer flavoprotein (beta-subunit).
 
 
 0.541
eftA
Putative electron transfer flavoprotein alpha-subunit (alpha-etf).
 
 
 0.468
coxB
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.447
glcF
Probable glycolate oxidase (iron-sulfur subunit) protein.
 
  
 0.428
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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