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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1560Putative transmembrane protein. (105 aa)    
Predicted Functional Partners:
RSp0806
Probable transmembrane protein.
  
     0.756
RSc1561
Probable hydrolase protein.
       0.734
metY
Probable o-acetylhomoserine (thiol)-lyase (methionine/homocysteine synthase) protein.
       0.699
RSp0795
Putative predicted alpha/beta hydrolase protein.
 
     0.538
RSc1563
Probable cystathionine-beta-synthase domain harboring protein.
  
    0.495
RSc0788
Probable transmembrane protein.
  
     0.424
RSc1125
Putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily) protein.
  
     0.409
RSp1030
Probable cog3687, predicted metal-dependent hydrolase protein.
  
     0.406
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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