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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1568Probable oxidoreductase protein. (301 aa)    
Predicted Functional Partners:
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
   0.873
RSc0156
Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein.
  
     0.752
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSp1422
Putative peptide synthetase protein.
 
 
 0.623
etf
Probable electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.616
RSc3098
Putative gcn5-related n-acetyltransferase; protein.
 
     0.436
RSc0779
Putative thioredoxin protein.
  
 
 0.429
RSc1806
Probable polyketide synthase protein.
  
 
 0.421
serA
Putative d-3-phosphoglycerate dehydrogenase oxidoreductase protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 
 0.420
fruK
Probable 1-phosphofructokinase protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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