STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1572Probable d-beta-hydroxybutyrate dehydrogenase (bdh) oxidoreductase protein. (259 aa)    
Predicted Functional Partners:
lpsJ
Probable succinyl-coa:3-ketoacid-coenzyme a transferase subunit b protein.
 0.980
lpsI
Probable fesuccinyl-coa:3-ketoacid-coenzyme a transferase subunit a protein.
 
 0.974
RSp1059
Probable dehydrogenase/reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 
0.916
adc
Probable acetoacetate decarboxylase (adc) (aad) protein; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
  
  
  0.913
RSc0261
Putative hydroxymethylglutaryl-coenzyme a lyase active site; protein.
   
 
  0.901
RSc1334
Probable d--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; Participates in the degradation of poly-3-hydroxybutyrate (PHB). It works downstream of poly(3-hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB- oligomers) into 3HB-monomers; Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family.
     
  0.900
RSc1573
Putative hydrolase protein.
 
   0.751
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSc0156
Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein.
  
     0.642
RSc1575
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.625
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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