STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1573Putative hydrolase protein. (323 aa)    
Predicted Functional Partners:
RSc1575
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.775
RSc1572
Probable d-beta-hydroxybutyrate dehydrogenase (bdh) oxidoreductase protein.
 
  0.772
relA
Probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.704
phbC
Probable poly-beta-hydroxybutyrate polymerase transmembrane protein.
  
   
 0.696
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.671
lpsJ
Probable succinyl-coa:3-ketoacid-coenzyme a transferase subunit b protein.
  
  
 0.626
RSc0281
Putative beta-lactamase-like protein.
  
     0.568
lpsI
Probable fesuccinyl-coa:3-ketoacid-coenzyme a transferase subunit a protein.
  
  
 0.561
RSc0553
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.531
RSc1806
Probable polyketide synthase protein.
  
 0.463
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.