STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1575Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (131 aa)    
Predicted Functional Partners:
relA
Probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.784
RSc1573
Putative hydrolase protein.
  
    0.775
RSc1572
Probable d-beta-hydroxybutyrate dehydrogenase (bdh) oxidoreductase protein.
       0.625
lpsJ
Probable succinyl-coa:3-ketoacid-coenzyme a transferase subunit b protein.
  
    0.603
lpsI
Probable fesuccinyl-coa:3-ketoacid-coenzyme a transferase subunit a protein.
       0.545
RSc2545
Hypothetical ybak/prolyl-trna synthetase associated region; protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
 
     0.421
pncB
Probable nicotinate phosphoribosyltransferase (naprtase) protein; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
 
    0.414
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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