STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1588Probable amino-acid transporter transmembrane protein. (476 aa)    
Predicted Functional Partners:
RSp0240
Putative glycosidase possibly involved in trehalose metabolism protein.
   
 0.786
glgE
Putative alpha-amylase-related protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.786
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
    
 0.557
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.541
RSc1806
Probable polyketide synthase protein.
  
 
 0.486
dinB
Probable dna polymerase iv (pol iv) protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.474
pheA
Probable bifunctional protein: chorismate mutase and prephenate dehydratase.
   
 
 0.468
RSp1046
Probable amino acid transporter transmembrane protein.
  
     0.457
fruB
Probable multiphosphoryl transfer protein mtp.
  
 
 0.449
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
  
  
 0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.