STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1606Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (323 aa)    
Predicted Functional Partners:
RSc1961
Putative aaa atpase; protein.
 
 
 0.906
RSc3104
Probable calcium-binding signal peptide protein.
    
 0.808
RSc3358
Putative set domain protein; Miscellaneous; hypothetical/global homology.
  
 0.801
RSc1607
Probable transmembrane protein.
   
   0.777
dnaJ
Probable chaperone protein dnaj; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwee [...]
   
 0.773
cobB-2
Putative nad-dependent protein deacetylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
    
 0.772
RSc2158
Putative protein phosphatase 2c-like.
   
 
 0.757
RSp0087
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 
 0.750
RSp1127
Probable transmembrane abc transporter protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.738
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
    
 
 0.725
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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